Stochastic models in biology 1000-1L13MSB
Biological systems such as neural networks process and store information in their activities or structure. Empirical observations suggest that this information processing is very efficient despite of molecular noise (stochasticity). It means that neurons in the brain can very accurately encode the incoming information from the outside world, and write it in synapses in a stable manner, which is related to learning and memory. Learning processes are also present on a macro scale in the creation of moving spatial structures (swarms, clusters of cooperators in spatial evolution games).
The proseminar will be devoted to mathematical modeling of these topics, using probabilistic models with the elements of information theory and machine learning. We do not assume any detailed biological knowledge of students - all the necessary facts will be given during initial lectures (meetings). Also, the necessary mathematical tools will be presented in the course of the seminar.
Mathematical requirements: knowledge of the basics of probability theory, and the ability to analyze and solve simple ordinary differential equations.
Type of course
Course coordinators
Learning outcomes
Knowledge and skills:
1. Knows basic models of neural networks and swarms, and their functions.
2. Can construct a simple mathematical model of a chosen biological system.
Social competences:
1. Knows how to talk to biologists.
2. Is not afraid to cooperate with biologists.
3. Can give a talk about mathematical modeling of biological systems.
Assessment criteria
Participation in seminars, giving talks.
Additional information
Information on level of this course, year of study and semester when the course unit is delivered, types and amount of class hours - can be found in course structure diagrams of apropriate study programmes. This course is related to the following study programmes:
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